Package: do3PCA
Title: Probabilistic Phylogenetic Principal Component Analysis
Version: 1.0.2
Authors@R: 
    person("Daniel", "Caetano", , "caetanods1@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2803-4064"))
Description: Estimates probabilistic phylogenetic Principal Component
        Analysis (PCA) and non-phylogenetic probabilistic PCA. Provides
        methods to implement alternative models of trait evolution
        including Brownian motion (BM), Ornstein-Uhlenbeck (OU), Early
        Burst (EB), and Pagel's lambda. Also provides flexible biplot
        functions.
License: GPL (>= 2.0)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 3.5.0), Rdimtools
Imports: ape, phytools, matrixcalc, mclust, nloptr, ratematrix, stats,
        utils, mcmc, Matrix
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev libgmp3-dev make libxml2-dev
        pkg-config libx11-dev libclang-dev
Repository: https://caetanods.r-universe.dev
Date/Publication: 2025-09-05 14:21:05 UTC
RemoteUrl: https://github.com/caetanods/do3pca
RemoteRef: HEAD
RemoteSha: dc0eece3ed6bc20d44a3c2ac0020a4a18fd0bec7
NeedsCompilation: no
Packaged: 2026-06-06 06:56:12 UTC; root
Author: Daniel Caetano [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2803-4064>)
Maintainer: Daniel Caetano <caetanods1@gmail.com>