Package: do3PCA 1.0.0
do3PCA: Probabilistic Phylogenetic Principal Component Analysis
Estimates probabilistic phylogenetic Principal Component Analysis (PCA) and non-phylogenetic probabilistic PCA. Provides methods to implement alternative models of trait evolution including Brownian motion (BM), Ornstein-Uhlenbeck (OU), Early Burst (EB), and Pagel's lambda. Also provides flexible biplot functions.
Authors:
do3PCA_1.0.0.tar.gz
do3PCA_1.0.0.zip(r-4.5)do3PCA_1.0.0.zip(r-4.4)do3PCA_1.0.0.zip(r-4.3)
do3PCA_1.0.0.tgz(r-4.4-any)do3PCA_1.0.0.tgz(r-4.3-any)
do3PCA_1.0.0.tar.gz(r-4.5-noble)do3PCA_1.0.0.tar.gz(r-4.4-noble)
do3PCA_1.0.0.tgz(r-4.4-emscripten)do3PCA_1.0.0.tgz(r-4.3-emscripten)
do3PCA.pdf |do3PCA.html✨
do3PCA/json (API)
# Install 'do3PCA' in R: |
install.packages('do3PCA', repos = c('https://caetanods.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:80f2262ba8. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | OK | Oct 25 2024 |
R-4.5-linux | OK | Oct 25 2024 |
R-4.4-win | OK | Oct 25 2024 |
R-4.4-mac | OK | Oct 25 2024 |
R-4.3-win | OK | Oct 25 2024 |
R-4.3-mac | OK | Oct 25 2024 |
Exports:doBiplotphylProbPCAProbPCA
Dependencies:ADMMapebase64encbitbit64bslibcachemclarabelclicliprclusterclusterGenerationcodacodetoolscolorspacecombinatcorpcorcpp11crayonCVXRdbscanDEoptimdeSolvedigestdoParalleldotCall64ECOSolveRellipseevaluateexpmfansifastclusterfastmapfastmatchfontawesomeforeachfsfuturefuture.applygeigergenericsglassoFastglobalsgluegmphighrhmshtmltoolshtmlwidgetsigraphiteratorsjquerylibjsonliteknitrlabdsvlatticelifecyclelistenvmagrittrmaotaimapsMASSMatrixmatrixcalcmclustmclustcompmemoisemgcvmimeminpack.lmmnormtmvMORPHmvtnormncbitnlmenloptrnumDerivoptimParallelosqpparallellypbmcapplyphangornphylolmphytoolspillarpkgconfigpracmaprettyunitsprogressquadprogR6RANNrappdirsratematrixrbibutilsRcppRcppArmadilloRcppDERcppDistRcppEigenRdimtoolsRdpackreadrrglrlangrmarkdownRmpfrRSpectraRtsnesassscatterplot3dscsshapesspamsubplextibbletidyselecttinytextzdbutf8vctrsvroomwithrxfunyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Make biplot for any type of PCA | doBiplot |
Probabilistic Phylogenetic PCA | phylProbPCA |
Probabilistic PCA | ProbPCA |