Package: do3PCA 1.0.0

do3PCA: Probabilistic Phylogenetic Principal Component Analysis

Estimates probabilistic phylogenetic Principal Component Analysis (PCA) and non-phylogenetic probabilistic PCA. Provides methods to implement alternative models of trait evolution including Brownian motion (BM), Ornstein-Uhlenbeck (OU), Early Burst (EB), and Pagel's lambda. Also provides flexible biplot functions.

Authors:Daniel Caetano [aut, cre]

do3PCA_1.0.0.tar.gz
do3PCA_1.0.0.zip(r-4.5)do3PCA_1.0.0.zip(r-4.4)do3PCA_1.0.0.zip(r-4.3)
do3PCA_1.0.0.tgz(r-4.5-any)do3PCA_1.0.0.tgz(r-4.4-any)do3PCA_1.0.0.tgz(r-4.3-any)
do3PCA_1.0.0.tar.gz(r-4.5-noble)do3PCA_1.0.0.tar.gz(r-4.4-noble)
do3PCA_1.0.0.tgz(r-4.4-emscripten)do3PCA_1.0.0.tgz(r-4.3-emscripten)
do3PCA.pdf |do3PCA.html
do3PCA/json (API)

# Install 'do3PCA' in R:
install.packages('do3PCA', repos = c('https://caetanods.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 205 downloads 3 exports 124 dependencies

Last updated 5 months agofrom:80f2262ba8. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 22 2025
R-4.5-winOKFeb 22 2025
R-4.5-macOKFeb 22 2025
R-4.5-linuxOKFeb 22 2025
R-4.4-winOKFeb 22 2025
R-4.4-macOKFeb 22 2025
R-4.3-winOKFeb 22 2025
R-4.3-macOKFeb 22 2025

Exports:doBiplotphylProbPCAProbPCA

Dependencies:ADMMapebase64encbitbit64bslibcachemclicliprclusterclusterGenerationcodacodetoolscolorspacecombinatcorpcorcpp11crayonCVXRdbscanDEoptimdeSolvedigestdoParalleldotCall64ECOSolveRellipseevaluateexpmfansifastclusterfastmapfastmatchfontawesomeforeachfsfuturefuture.applygeigergenericsglassoFastglobalsgluegmphighrhmshtmltoolshtmlwidgetsigraphiteratorsjquerylibjsonliteknitrlabdsvlatticelifecyclelistenvmagrittrmaotaimapsMASSMatrixmatrixcalcmclustmclustcompmemoisemgcvmimeminpack.lmmnormtmvMORPHmvtnormncbitnlmenloptrnumDerivoptimParallelosqpparallellypbmcapplyphangornphylolmphytoolspillarpkgconfigpracmaprettyunitsprogressquadprogR6RANNrappdirsratematrixrbibutilsRcppRcppArmadilloRcppDERcppDistRcppEigenRdimtoolsRdpackreadrrglrlangrmarkdownRmpfrRSpectraRtsnesassscatterplot3dscsshapesspamsubplextibbletidyselecttinytextzdbutf8vctrsvroomwithrxfunyaml